PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g030002m
Common NameCISIN_1g030002mg, LOC102625681
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 185aa    MW: 20901.6 Da    PI: 5.4549
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g030002mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.3e-1894144255
                AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+++AeIrdp     k  r++lg+f++  +Aaka++ a+ +++g
  orange1.1g030002m  94 HYRGVRRRP-WGKYAAEIRDP---ArKGSRVWLGTFDSDVDAAKAYDSAAFRMRG 144
                        8********.**********8...4445**********99*************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.54E-3093152No hitNo description
Gene3DG3DSA:3.30.730.103.0E-3193153IPR001471AP2/ERF domain
PfamPF008471.6E-1294144IPR001471AP2/ERF domain
PROSITE profilePS5103224.22394152IPR001471AP2/ERF domain
SMARTSM003801.3E-3594158IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-2294154IPR016177DNA-binding domain
PRINTSPR003671.9E-1395106IPR001471AP2/ERF domain
PRINTSPR003671.9E-13134154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MSNMTTLEEE SSILEFIRQF LLGDFTSLDD PNLSFLQPME SEFPVIKSEP DSPTFCEIIK  60
PEPLDITCLG SSNWTESPQK SSEPKLADTE ERKHYRGVRR RPWGKYAAEI RDPARKGSRV  120
WLGTFDSDVD AAKAYDSAAF RMRGRKAILN FPLEAGADSP PAKNSRKRRR EKTLDLQEST  180
ISII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2993153464ATERF1
3gcc_A2e-2993153464ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165169RKRRR
2165171RKRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM9060745e-65AM906074.1 Citrus medica mRNA for ethylene-responsive element binding protein (erebp gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006490013.21e-133PREDICTED: ethylene-responsive transcription factor ERF107
SwissprotQ9LY052e-42EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLA0A067DAI61e-133A0A067DAI6_CITSI; Uncharacterized protein
STRINGPOPTR_0003s15060.12e-52(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.16e-43ERF family protein